etec16s

DOI: 10.18129/B9.bioc.etec16s    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see etec16s.

Individual-specific changes in the human gut microbiota after challenge with enterotoxigenic Escherichia coli and subsequent ciprofloxacin treatment

Bioconductor version: 3.8

16S rRNA gene sequencing data to study changes in the faecal microbiota of 12 volunteers during a human challenge study with ETEC (H10407) and subsequent treatment with ciprofloxacin.

Author: Joseph N. Paulson

Maintainer: Joseph N. Paulson <jpaulson at jimmy.harvard.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("etec16s")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("etec16s")

 

PDF	R Script	etec16s
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, MicrobiomeData, SequencingData
Version	1.10.0
License	Artistic-2.0
Depends	R (>= 3.3), Biobase, metagenomeSeq(>= 1.12.0)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	metavizr
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	etec16s_1.10.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/etec16s
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/etec16s
Package Short Url	http://bioconductor.org/packages/etec16s/
Package Downloads Report	Download Stats