lumiBarnes

DOI: 10.18129/B9.bioc.lumiBarnes    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see lumiBarnes.

Barnes Benchmark Illumina Tissues Titration Data

Bioconductor version: 3.8

The Barnes benchmark dataset can be used to evaluate the algorithms for Illumina microarrays. It measured a titration series of two human tissues, blood and placenta, and includes six samples with the titration ratio of blood and placenta as 100:0, 95:5, 75:25, 50:50, 25:75 and 0:100. The samples were hybridized on HumanRef-8 BeadChip (Illumina, Inc) in duplicate. The data is loaded as an LumiBatch Object (see documents in the lumi package).

Author: Pan Du

Maintainer: Pan Du <dupan at northwestern.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("lumiBarnes")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	ChipOnChipData, ExperimentData, MicroarrayData, Tissue
Version	1.22.0
License	LGPL
Depends	R (>= 2.0), Biobase(>= 2.5.5), lumi(>= 1.1.0)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	arrayMvout, lumi
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	lumiBarnes_1.22.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/lumiBarnes
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/lumiBarnes
Package Short Url	http://bioconductor.org/packages/lumiBarnes/
Package Downloads Report	Download Stats