msd16s

DOI: 10.18129/B9.bioc.msd16s    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see msd16s.

Healthy and moderate to severe diarrhea 16S expression data

Bioconductor version: 3.8

Gut 16S sequencing expression data from 992 healthy and moderate-to-severe diarrhetic samples used in 'Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition'.

Author: Joseph N. Paulson, Hector Corrada Bravo, Mihai Pop

Maintainer: Joseph N. Paulson <jpaulson at umiacs.umd.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("msd16s")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("msd16s")

 

PDF	R Script	msd16s
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, MicrobiomeData, SequencingData
Version	1.2.0
License	Artistic-2.0
Depends	R (>= 2.10), Biobase, metagenomeSeq
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL	http://www.cbcb.umd.edu/research/projects/GEMS-pathogen-discovery
Depends On Me
Imports Me
Suggests Me	metavizr
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	msd16s_1.2.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/msd16s
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/msd16s
Package Short Url	http://bioconductor.org/packages/msd16s/
Package Downloads Report	Download Stats