sampleClassifierData

DOI: 10.18129/B9.bioc.sampleClassifierData    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see sampleClassifierData.

Pre-processed data for use with the sampleClassifier package

Bioconductor version: 3.8

This package contains two microarray and two RNA-seq datasets that have been preprocessed for use with the sampleClassifier package. The RNA-seq data are derived from Fagerberg et al. (2014) and the Illumina Body Map 2.0 data. The microarray data are derived from Roth et al. (2006) and Ge et al. (2005).

Author: Khadija El Amrani

Maintainer: Khadija El Amrani <khadija.el-amrani at charite.de>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("sampleClassifierData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sampleClassifierData")

 

PDF	R Script	sampleClassifierData Introduction
PDF		Reference Manual
Text		NEWS

Details

biocViews	ArrayExpress, ExperimentData, ExpressionData, MicroarrayData, RNASeqData, SequencingData
Version	1.6.0
License	Artistic-2.0
Depends	R (>= 3.4), SummarizedExperiment
Imports
LinkingTo
Suggests	BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	sampleClassifier
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	sampleClassifierData_1.6.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/sampleClassifierData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/sampleClassifierData
Package Short Url	http://bioconductor.org/packages/sampleClassifierData/
Package Downloads Report	Download Stats