scRNAseq

DOI: 10.18129/B9.bioc.scRNAseq    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see scRNAseq.

A Collection of Public Single-Cell RNA-Seq Datasets

Bioconductor version: 3.8

Gene-level read counts of three public scRNA-seq datasets. See vignette for details.

Author: Davide Risso [aut, cre, cph], Michael Cole [aut]

Maintainer: Davide Risso <risso.davide at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("scRNAseq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scRNAseq")

 

HTML	R Script	scRNAseq
PDF		Reference Manual

Details

biocViews	ExperimentData, ExpressionData, RNASeqData, SequencingData
Version	1.8.0
License	CC0
Depends	R (>= 3.3), SummarizedExperiment
Imports
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me	simpleSingleCell
Imports Me
Suggests Me	clusterExperiment, iSEE, scFeatureFilter, scone, SingleCellExperiment, singleCellTK, SummarizedBenchmark, zinbwave
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	scRNAseq_1.8.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/scRNAseq
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/scRNAseq
Package Short Url	http://bioconductor.org/packages/scRNAseq/
Package Downloads Report	Download Stats