simpIntLists

DOI: 10.18129/B9.bioc.simpIntLists    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see simpIntLists.

The package contains BioGRID interactions for various organisms in a simple format

Bioconductor version: 3.8

The package contains BioGRID interactions for arabidopsis(thale cress), c.elegans, fruit fly, human, mouse, yeast( budding yeast ) and S.pombe (fission yeast) . Entrez ids, official names and unique ids can be used to find proteins. The format of interactions are lists. For each gene/protein, there is an entry in the list with "name" containing name of the gene/protein and "interactors" containing the list of genes/proteins interacting with it.

Author: Kircicegi Korkmaz, Volkan Atalay, Rengul Cetin-Atalay

Maintainer: Kircicegi Korkmaz <e102771 at ceng.metu.edu.tr>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("simpIntLists")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("simpIntLists")

 

PDF	R Script	simpIntLists
PDF		Reference Manual

Details

biocViews	Arabidopsis_thaliana_Data, ExperimentData
Version	1.18.0
License	GPL (>= 2)
Depends
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	ibh
Imports Me
Suggests Me	GeneNetworkBuilder
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	simpIntLists_1.18.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/simpIntLists
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/simpIntLists
Package Short Url	http://bioconductor.org/packages/simpIntLists/
Package Downloads Report	Download Stats