Loading required data for plot
# Load results from previous sections
mae <- get(load("mae.rda"))
pair <- readr::read_csv("result/getPair.hypo.pairs.significant.csv")
Schematic plot
Schematic plot shows a brief view of linkages between genes and probes.
Nearby Genes
Generate schematic plot for one probe with 20 nearby genes and label the gene significantly linked with the probe in red.
schematic.plot(
pair = pair,
data = mae,
group.col = "definition",
byProbe = pair$Probe[1],
save = FALSE
)
Nearby Probes
Generate schematic plot for one gene with the probes which the gene is significantly linked to.
schematic.plot(
pair = pair,
data = mae,
group.col = "definition",
byGene = pair$GeneID[1],
save = FALSE
)