To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("EGSEA")

In most cases, you don't need to download the package archive at all.

EGSEA

This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see EGSEA.

Ensemble of Gene Set Enrichment Analyses

Bioconductor version: 3.3

This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.

Author: Monther Alhamdoosh, Milica Ng and Matthew Ritchie

Maintainer: Monther Alhamdoosh <m.hamdoosh at gmail.com>

Citation (from within R, enter citation("EGSEA")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("EGSEA")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EGSEA")

biocViews	DifferentialExpression, GO, GeneExpression, GeneSetEnrichment, Genetics, GraphAndNetwork, KEGG, Metabolomics, Microarray, MultipleComparison, OneChannel, Pathways, Proteomics, RNASeq, Sequencing, Software, SystemsBiology, TwoChannel
Version	1.0.3
In Bioconductor since	BioC 3.3 (R-3.3) (< 6 months)
License	GPL-2
Depends	R (>= 3.3), Biobase, gage(>= 2.14.4), AnnotationDbi, topGO(>= 2.16.0), pathview(>= 1.4.2)
Imports	PADOG(>= 1.6.0), GSVA(>= 1.12.0), globaltest(>= 5.18.0), limma(>= 3.20.9), edgeR(>= 3.6.8), HTMLUtils (>= 0.1.5), hwriter (>= 1.2.2), gplots (>= 2.14.2), ggplot2 (>= 1.0.0), safe(>= 3.4.0), stringi (>= 0.5.0), parallel, stats, grDevices, graphics, utils, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db, EGSEAdata
LinkingTo
Suggests	BiocStyle, knitr, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	EGSEAdata
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	EGSEA_1.0.3.tar.gz
Windows Binary	EGSEA_1.0.3.zip
Mac OS X 10.9 (Mavericks)	EGSEA_1.0.3.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/EGSEA/tree/release-3.3
Package Short Url	http://bioconductor.org/packages/EGSEA/
Package Downloads Report	Download Stats

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