To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("topGO")
In most cases, you don't need to download the package archive at all.
topGO
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see topGO.
Enrichment Analysis for Gene Ontology
Bioconductor version: 3.3
topGO package provides tools for testing GO terms while accounting for the topology of the GO graph. Different test statistics and different methods for eliminating local similarities and dependencies between GO terms can be implemented and applied.
Author: Adrian Alexa, Jorg Rahnenfuhrer
Maintainer: Adrian Alexa <adrian.alexa at gmail.com>
Citation (from within R,
enter citation("topGO")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("topGO")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("topGO")
| R Script | topGO | |
| Reference Manual |
Details
| biocViews | Microarray, Software, Visualization |
| Version | 2.24.0 |
| In Bioconductor since | BioC 2.0 (R-2.5) (9.5 years) |
| License | LGPL |
| Depends | R (>= 2.10.0), methods, BiocGenerics(>= 0.13.6), graph(>= 1.14.0), Biobase(>= 2.0.0), GO.db(>= 2.3.0), AnnotationDbi(>= 1.7.19), SparseM (>= 0.73) |
| Imports | lattice, matrixStats, DBI |
| LinkingTo | |
| Suggests | ALL, hgu95av2.db, hgu133a.db, genefilter, xtable, multtest, Rgraphviz, globaltest |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | BgeeDB, ccTutorial, cellTree, compEpiTools, EGSEA, RNAither, tRanslatome |
| Imports Me | cellity, clusterProfiler, EnrichmentBrowser, GOSim, mvGST, pcaExplorer, psygenet2r, SEPA |
| Suggests Me | FGNet, miRNAtap, Ringo |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | topGO_2.24.0.tar.gz |
| Windows Binary | topGO_2.24.0.zip |
| Mac OS X 10.9 (Mavericks) | topGO_2.24.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/topGO/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/topGO/ |
| Package Downloads Report | Download Stats |
Documentation »
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