To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("topGO")
In most cases, you don't need to download the package archive at all.
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see topGO.
Bioconductor version: 3.3
topGO package provides tools for testing GO terms while accounting for the topology of the GO graph. Different test statistics and different methods for eliminating local similarities and dependencies between GO terms can be implemented and applied.
Author: Adrian Alexa, Jorg Rahnenfuhrer
Maintainer: Adrian Alexa <adrian.alexa at gmail.com>
Citation (from within R,
enter citation("topGO")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("topGO")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("topGO")
R Script | topGO | |
Reference Manual |
biocViews | Microarray, Software, Visualization |
Version | 2.24.0 |
In Bioconductor since | BioC 2.0 (R-2.5) (9.5 years) |
License | LGPL |
Depends | R (>= 2.10.0), methods, BiocGenerics(>= 0.13.6), graph(>= 1.14.0), Biobase(>= 2.0.0), GO.db(>= 2.3.0), AnnotationDbi(>= 1.7.19), SparseM (>= 0.73) |
Imports | lattice, matrixStats, DBI |
LinkingTo | |
Suggests | ALL, hgu95av2.db, hgu133a.db, genefilter, xtable, multtest, Rgraphviz, globaltest |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | BgeeDB, ccTutorial, cellTree, compEpiTools, EGSEA, RNAither, tRanslatome |
Imports Me | cellity, clusterProfiler, EnrichmentBrowser, GOSim, mvGST, pcaExplorer, psygenet2r, SEPA |
Suggests Me | FGNet, miRNAtap, Ringo |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | topGO_2.24.0.tar.gz |
Windows Binary | topGO_2.24.0.zip |
Mac OS X 10.9 (Mavericks) | topGO_2.24.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/topGO/tree/release-3.3 |
Package Short Url | http://bioconductor.org/packages/topGO/ |
Package Downloads Report | Download Stats |
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