To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("compEpiTools")

In most cases, you don't need to download the package archive at all.

compEpiTools

This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see compEpiTools.

Tools for computational epigenomics

Bioconductor version: 3.3

Tools for computational epigenomics developed for the analysis, integration and simultaneous visualization of various (epi)genomics data types across multiple genomic regions in multiple samples.

Author: Mattia Pelizzola, Kamal Kishore

Maintainer: Kamal Kishore <kamal.fartiyal84 at gmail.com>

Citation (from within R, enter citation("compEpiTools")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("compEpiTools")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("compEpiTools")

PDF	R Script	compEpiTools.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	Coverage, GeneExpression, GenomeAnnotation, Sequencing, Software, Visualization
Version	1.6.4
In Bioconductor since	BioC 3.0 (R-3.1) (2 years)
License	GPL
Depends	R (>= 3.1.1), methods, topGO, GenomicRanges
Imports	AnnotationDbi, BiocGenerics, Biostrings, Rsamtools, parallel, grDevices, gplots, IRanges, GenomicFeatures, XVector, methylPipe, GO.db, S4Vectors, GenomeInfoDb, ggplot2
LinkingTo
Suggests	BSgenome.Mmusculus.UCSC.mm9, TxDb.Mmusculus.UCSC.mm9.knownGene, org.Mm.eg.db, knitr, rtracklayer
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	compEpiTools_1.6.4.tar.gz
Windows Binary	compEpiTools_1.6.4.zip
Mac OS X 10.9 (Mavericks)	compEpiTools_1.6.4.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/compEpiTools/tree/release-3.3
Package Short Url	http://bioconductor.org/packages/compEpiTools/
Package Downloads Report	Download Stats

Documentation »

Bioconductor

Package vignettes and manuals.
Workflows for learning and use.
Course and conference material.
Videos.
Community resources and tutorials.

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Support site - for questions about Bioconductor packages
Bioc-devel mailing list - for package developers