To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("HTSeqGenie")
In most cases, you don't need to download the package archive at all.
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see HTSeqGenie.
Bioconductor version: 3.3
Libraries to perform NGS analysis.
Author: Gregoire Pau, Jens Reeder
Maintainer: Jens Reeder <reeder.jens at gene.com>
Citation (from within R,
enter citation("HTSeqGenie")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("HTSeqGenie")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HTSeqGenie")
R Script | HTSeqGenie | |
Reference Manual | ||
Text | NEWS |
biocViews | Software |
Version | 4.2.0 |
In Bioconductor since | BioC 2.11 (R-2.15) (4 years) |
License | Artistic-2.0 |
Depends | R (>= 3.0.0), gmapR(>= 1.8.0), ShortRead(>= 1.19.13), VariantAnnotation(>= 1.8.3) |
Imports | BiocGenerics(>= 0.2.0), S4Vectors(>= 0.9.25), IRanges(>= 1.21.39), GenomicRanges(>= 1.23.21), Rsamtools(>= 1.8.5), Biostrings(>= 2.24.1), chipseq(>= 1.6.1), hwriter (>= 1.3.0), Cairo (>= 1.5.5), GenomicFeatures(>= 1.9.31), BiocParallel, parallel, tools, rtracklayer(>= 1.17.19), GenomicAlignments, VariantTools(>= 1.7.7), GenomeInfoDb, SummarizedExperiment, methods |
LinkingTo | |
Suggests | TxDb.Hsapiens.UCSC.hg19.knownGene, LungCancerLines, org.Hs.eg.db |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | HTSeqGenie_4.2.0.tar.gz |
Windows Binary | |
Mac OS X 10.9 (Mavericks) | |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/HTSeqGenie/tree/release-3.3 |
Package Short Url | http://bioconductor.org/packages/HTSeqGenie/ |
Package Downloads Report | Download Stats |
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