To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("ShortRead")
In most cases, you don't need to download the package archive at all.
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see ShortRead.
Bioconductor version: 3.3
This package implements sampling, iteration, and input of FASTQ files. The package includes functions for filtering and trimming reads, and for generating a quality assessment report. Data are represented as DNAStringSet-derived objects, and easily manipulated for a diversity of purposes. The package also contains legacy support for early single-end, ungapped alignment formats.
Author: Martin Morgan, Michael Lawrence, Simon Anders
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R,
enter citation("ShortRead")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("ShortRead")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ShortRead")
R Script | An introduction to ShortRead | |
Reference Manual | ||
Text | NEWS |
Follow Installation instructions to use this package in your R session.
Package Source | ShortRead_1.30.0.tar.gz |
Windows Binary | ShortRead_1.30.0.zip (32- & 64-bit) |
Mac OS X 10.9 (Mavericks) | ShortRead_1.30.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/ShortRead/tree/release-3.3 |
Package Short Url | http://bioconductor.org/packages/ShortRead/ |
Package Downloads Report | Download Stats |
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