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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rSFFreader")
In most cases, you don't need to download the package archive at all.
rSFFreader
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see rSFFreader.
rSFFreader reads in sff files generated by Roche 454 and Life Sciences Ion Torrent sequencers
Bioconductor version: 3.3
rSFFreader reads sequence, qualities and clip point values from sff files generated by Roche 454 and Life Sciences Ion Torrent sequencers into similar classes as are present for fastq files.
Author: Matt Settles <mattsettles at gmail.com>, Sam Hunter, Brice Sarver, Ilia Zhbannikov, Kyu-Chul Cho
Maintainer: Matt Settles <mattsettles at gmail.com>
Citation (from within R,
enter citation("rSFFreader")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rSFFreader")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rSFFreader")
| R Script | An introduction to rSFFreader | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DataImport, Sequencing, Software |
| Version | 0.20.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (4 years) |
| License | Artistic-2.0 |
| Depends | ShortRead(>= 1.23.17) |
| Imports | methods, Biostrings, IRanges |
| LinkingTo | S4Vectors, IRanges, XVector, Biostrings |
| Suggests | xtable |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | hiReadsProcessor |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | rSFFreader_0.20.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.9 (Mavericks) | rSFFreader_0.20.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/rSFFreader/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/rSFFreader/ |
| Package Downloads Report | Download Stats |
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