To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("TargetScore")
In most cases, you don't need to download the package archive at all.
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see TargetScore.
Bioconductor version: 3.3
Infer the posterior distributions of microRNA targets by probabilistically modelling the likelihood microRNA-overexpression fold-changes and sequence-based scores. Variaitonal Bayesian Gaussian mixture model (VB-GMM) is applied to log fold-changes and sequence scores to obtain the posteriors of latent variable being the miRNA targets. The final targetScore is computed as the sigmoid-transformed fold-change weighted by the averaged posteriors of target components over all of the features.
Author: Yue Li
Maintainer: Yue Li <yueli at cs.toronto.edu>
Citation (from within R,
enter citation("TargetScore")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("TargetScore")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TargetScore")
R Script | TargetScore: Infer microRNA targets using microRNA-overexpression data and sequence information | |
Reference Manual | ||
Text | NEWS |
biocViews | Software, miRNA |
Version | 1.10.0 |
In Bioconductor since | BioC 2.13 (R-3.0) (3 years) |
License | GPL-2 |
Depends | pracma, Matrix |
Imports | |
LinkingTo | |
Suggests | TargetScoreData, gplots, Biobase, GEOquery |
SystemRequirements | |
Enhances | |
URL | http://www.cs.utoronto.ca/~yueli/software.html |
Depends On Me | |
Imports Me | |
Suggests Me | TargetScoreData |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | TargetScore_1.10.0.tar.gz |
Windows Binary | TargetScore_1.10.0.zip |
Mac OS X 10.9 (Mavericks) | TargetScore_1.10.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/TargetScore/tree/release-3.3 |
Package Short Url | http://bioconductor.org/packages/TargetScore/ |
Package Downloads Report | Download Stats |
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