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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TargetScoreData")
In most cases, you don't need to download the package archive at all.
TargetScoreData
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see TargetScoreData.
TargetScoreData
Bioconductor version: 3.3
Precompiled and processed miRNA-overexpression fold-changes from 84 Gene Expression Omnibus (GEO) series corresponding to 6 platforms, 77 human cells or tissues, and 113 distinct miRNAs. Accompanied with the data, we also included in this package the sequence feature scores from TargetScanHuman 6.1 including the context+ score and the probabilities of conserved targeting for each miRNA-mRNA interaction. Thus, the user can use these static sequence-based scores together with user-supplied tissue/cell-specific fold-change due to miRNA overexpression to predict miRNA targets using the package TargetScore (download separately)
Author: Yue Li
Maintainer: Yue Li <yueli at cs.toronto.edu>
Citation (from within R,
enter citation("TargetScoreData")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TargetScoreData")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TargetScoreData")
| R Script | Processed human microRNA-overexpression data from GEO, and sequence information from TargetScan, and targetScore from TargetScore | |
| Reference Manual |
Details
| biocViews | ExperimentData, RNASeqData, miRNAData |
| Version | 1.8.0 |
| License | GPL-2 |
| Depends | |
| Imports | |
| LinkingTo | |
| Suggests | TargetScore, gplots |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | TargetScore |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | TargetScoreData_1.8.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/TargetScoreData/ |
| Package Downloads Report | Download Stats |
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