To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("h5vc")
In most cases, you don't need to download the package archive at all.
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see h5vc.
Bioconductor version: 3.3
This package contains functions to interact with tally data from NGS experiments that is stored in HDF5 files. For detail see the webpage at http://www.ebi.ac.uk/~pyl/h5vc.
Author: Paul Theodor Pyl
Maintainer: Paul Theodor Pyl <paul.theodor.pyl at gmail.com>
Citation (from within R,
enter citation("h5vc")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("h5vc")
HTML | R Script | Building a minimal genome browser with h5vc and shiny |
HTML | R Script | h5vc -- Tour |
Reference Manual |
biocViews | Software |
Version | 2.6.3 |
In Bioconductor since | BioC 2.13 (R-3.0) (3 years) |
License | GPL (>= 3) |
Depends | grid, gridExtra, ggplot2 |
Imports | rhdf5, reshape, S4Vectors, IRanges, Biostrings, Rsamtools(>= 1.19.38), methods, GenomicRanges, abind, BiocParallel, BatchJobs, h5vcData, GenomeInfoDb |
LinkingTo | Rsamtools |
Suggests | knitr, locfit, BSgenome.Hsapiens.UCSC.hg19, bit64, biomaRt, BSgenome.Hsapiens.NCBI.GRCh38, RUnit, BiocGenerics |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | h5vcData |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | h5vc_2.6.3.tar.gz |
Windows Binary | h5vc_2.6.3.zip (32- & 64-bit) |
Mac OS X 10.9 (Mavericks) | h5vc_2.6.3.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/h5vc/tree/release-3.3 |
Package Short Url | http://bioconductor.org/packages/h5vc/ |
Package Downloads Report | Download Stats |
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