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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("mosaics")
In most cases, you don't need to download the package archive at all.
mosaics
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see mosaics.
MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)
Bioconductor version: 3.3
This package provides functions for fitting MOSAiCS and MOSAiCS-HMM, a statistical framework to analyze one-sample or two-sample ChIP-seq data of transcription factor binding and histone modification.
Author: Dongjun Chung, Pei Fen Kuan, Rene Welch, Sunduz Keles
Maintainer: Dongjun Chung <dongjun.chung at gmail.com>
Citation (from within R,
enter citation("mosaics")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("mosaics")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("mosaics")
| R Script | MOSAiCS | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Bioinformatics, ChIPseq, Genetics, Sequencing, Software, Transcription |
| Version | 2.10.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (5.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.0.0), methods, graphics, Rcpp |
| Imports | MASS, splines, lattice, IRanges, GenomicRanges, GenomicAlignments, Rsamtools, GenomeInfoDb, S4Vectors |
| LinkingTo | Rcpp |
| Suggests | mosaicsExample |
| SystemRequirements | Perl |
| Enhances | parallel |
| URL | http://groups.google.com/group/mosaics_user_group |
| Depends On Me | jmosaics |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | mosaics_2.10.0.tar.gz |
| Windows Binary | mosaics_2.10.0.zip (32- & 64-bit) |
| Mac OS X 10.9 (Mavericks) | mosaics_2.10.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/mosaics/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/mosaics/ |
| Package Downloads Report | Download Stats |
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