- Home
- Bioconductor 3.3
- Experiment Packages
- mosaicsExample
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("mosaicsExample")
In most cases, you don't need to download the package archive at all.
mosaicsExample
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see mosaicsExample.
Example data for the mosaics package, which implements MOSAiCS and MOSAiCS-HMM, a statistical framework to analyze one-sample or two-sample ChIP-seq data for transcription factor binding and histone modification
Bioconductor version: 3.3
Data for the mosaics package, consisting of (1) chromosome 22 ChIP and control sample data from a ChIP-seq experiment of STAT1 binding and H3K4me3 modification in MCF7 cell line from ENCODE database (HG19) and (2) chromosome 21 ChIP and control sample data from a ChIP-seq experiment of STAT1 binding, with mappability, GC content, and sequence ambiguity scores of human genome HG18.
Author: Dongjun Chung, Pei Fen Kuan, Rene Welch, Sunduz Keles
Maintainer: Dongjun Chung <dongjun.chung at gmail.com>
Citation (from within R,
enter citation("mosaicsExample")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("mosaicsExample")
Documentation
| Reference Manual |
Details
| biocViews | ChIPseqData, ExperimentData, Homo_sapiens |
| Version | 1.10.0 |
| License | GPL (>= 2) |
| Depends | R (>= 2.11.1) |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | http://groups.google.com/group/mosaics_user_group |
| Depends On Me | |
| Imports Me | |
| Suggests Me | mosaics |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | mosaicsExample_1.10.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/mosaicsExample/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
