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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("seqPattern")
In most cases, you don't need to download the package archive at all.
seqPattern
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see seqPattern.
Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequences
Bioconductor version: 3.3
Visualising oligonucleotide patterns and sequence motifs occurrences across a large set of sequences centred at a common reference point and sorted by a user defined feature.
Author: Vanja Haberle <vanja.haberle at gmail.com>
Maintainer: Vanja Haberle <vanja.haberle at gmail.com>
Citation (from within R,
enter citation("seqPattern")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("seqPattern")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("seqPattern")
| R Script | seqPattern | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | SequenceMatching, Software, Visualization |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (1.5 years) |
| License | GPL-3 |
| Depends | methods, R (>= 2.15.0) |
| Imports | Biostrings, GenomicRanges, IRanges, KernSmooth, plotrix |
| LinkingTo | |
| Suggests | BSgenome.Drerio.UCSC.danRer7, CAGEr, RUnit, BiocGenerics, BiocStyle |
| SystemRequirements | |
| Enhances | parallel |
| URL | |
| Depends On Me | |
| Imports Me | genomation |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | seqPattern_1.4.0.tar.gz |
| Windows Binary | seqPattern_1.4.0.zip |
| Mac OS X 10.9 (Mavericks) | seqPattern_1.4.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/seqPattern/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/seqPattern/ |
| Package Downloads Report | Download Stats |
Documentation »
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