To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BSgenome.Drerio.UCSC.danRer7")

In most cases, you don't need to download the package archive at all.

BSgenome.Drerio.UCSC.danRer7

This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see BSgenome.Drerio.UCSC.danRer7.

Full genome sequences for Danio rerio (UCSC version danRer7)

Bioconductor version: 3.3

Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer7, Jul. 2010) and stored in Biostrings objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BSgenome.Drerio.UCSC.danRer7")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BSgenome.Drerio.UCSC.danRer7")


PDF		Reference Manual

biocViews	AnnotationData, BSgenome, Danio_rerio, Genetics
Version	1.4.0
License	Artistic-2.0
Depends	BSgenome(>= 1.33.5)
Imports	BSgenome
LinkingTo
Suggests	GenomicFeatures
SystemRequirements
Enhances
URL
Depends On Me	BSgenome.Drerio.UCSC.danRer7.masked, cleanUpdTSeq
Imports Me	BSgenome.Drerio.UCSC.danRer7.masked
Suggests Me	CAGEr, ChIPpeakAnno, motifbreakR, seqPattern

Follow Installation instructions to use this package in your R session.

Package Source	BSgenome.Drerio.UCSC.danRer7_1.4.0.tar.gz
Windows Binary
Mac OS X 10.9 (Mavericks)
Package Short Url	http://bioconductor.org/packages/BSgenome.Drerio.UCSC.danRer7/
Package Downloads Report	Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Please read the posting guide. Post questions about Bioconductor to one of the following locations: