This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see MultiAssayExperiment.
Bioconductor version: 3.8
MultiAssayExperiment harmonizes data management of multiple assays performed on an overlapping set of specimens. It provides a familiar Bioconductor user experience by extending concepts from SummarizedExperiment, supporting an open-ended mix of standard data classes for individual assays, and allowing subsetting by genomic ranges or rownames.
Author: Marcel Ramos [aut, cre], Levi Waldron [aut], MultiAssay SIG [ctb]
Maintainer: Marcel Ramos <marcel.ramos at roswellpark.org>
Citation (from within R,
enter citation("MultiAssayExperiment")
):
To install this package, start R (version "3.5") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("MultiAssayExperiment")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MultiAssayExperiment")
HTML | R Script | Coordinating Analysis of Multi-Assay Experiments |
HTML | R Script | HDF5Array and MultiAssayExperiment |
MultiAssayExperiment_cheatsheet.pdf | ||
HTML | R Script | Quick-start Guide |
Reference Manual | ||
Text | NEWS |
biocViews | DataRepresentation, Infrastructure, Software |
Version | 1.8.3 |
In Bioconductor since | BioC 3.4 (R-3.3) (2.5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.5.0), SummarizedExperiment(>= 1.3.81) |
Imports | methods, GenomicRanges(>= 1.25.93), BiocGenerics, S4Vectors(>= 0.17.5), IRanges, Biobase, stats, tidyr, utils |
LinkingTo | |
Suggests | BiocStyle, testthat, knitr, rmarkdown, R.rsp, HDF5Array, RaggedExperiment, UpSetR, survival, survminer |
SystemRequirements | |
Enhances | |
URL | http://waldronlab.io/MultiAssayExperiment/ |
BugReports | https://github.com/waldronlab/MultiAssayExperiment/issues |
Depends On Me | ClassifyR, curatedTCGAData, glmSparseNet, hipathia, InTAD, missRows, OMICsPCAdata, yriMulti |
Imports Me | AffiXcan, CAGEr, ELMER, GOpro, OMICsPCA, omicsPrint, TCGAutils |
Suggests Me | BiocOncoTK, brgedata, MultiDataSet, RaggedExperiment |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | MultiAssayExperiment_1.8.3.tar.gz |
Windows Binary | MultiAssayExperiment_1.8.3.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | MultiAssayExperiment_1.8.3.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/MultiAssayExperiment |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MultiAssayExperiment |
Package Short Url | http://bioconductor.org/packages/MultiAssayExperiment/ |
Package Downloads Report | Download Stats |
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