This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see openCyto.
Bioconductor version: 3.8
This package is designed to facilitate the automated gating methods in sequential way to mimic the manual gating strategy.
Author: Mike Jiang, John Ramey, Greg Finak, Raphael Gottardo
Maintainer: Mike Jiang <wjiang2 at fhcrc.org>
Citation (from within R,
enter citation("openCyto")
):
To install this package, start R (version "3.5") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("openCyto")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("openCyto")
HTML | R Script | An Introduction to the openCyto package |
HTML | R Script | How to use different auto gating functions |
HTML | R Script | How to write a csv gating template |
Reference Manual | ||
Text | NEWS |
biocViews | DataImport, DataRepresentation, FlowCytometry, ImmunoOncology, Preprocessing, Software |
Version | 1.20.2 |
In Bioconductor since | BioC 2.13 (R-3.0) (5.5 years) |
License | Artistic-2.0 |
Depends | flowWorkspace(>= 3.17.43) |
Imports | methods, Biobase, BiocGenerics, gtools, flowCore(>= 1.31.17), flowViz, ncdfFlow(>= 2.11.34), flowWorkspace, flowStats(>= 3.29.1), flowClust(>= 3.11.4), MASS, clue, plyr, RBGL, graph, data.table, ks, RColorBrewer, lattice, rrcov, R.utils |
LinkingTo | Rcpp |
Suggests | flowWorkspaceData, knitr, testthat, utils, tools, parallel, ggcyto |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | CytoML |
Suggests Me | flowCore, ggcyto |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | openCyto_1.20.2.tar.gz |
Windows Binary | openCyto_1.20.2.zip |
Mac OS X 10.11 (El Capitan) | openCyto_1.20.2.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/openCyto |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/openCyto |
Package Short Url | http://bioconductor.org/packages/openCyto/ |
Package Downloads Report | Download Stats |
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