HDCytoData

DOI: 10.18129/B9.bioc.HDCytoData    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see HDCytoData.

Collection of high-dimensional cytometry benchmark datasets in Bioconductor object formats

Bioconductor version: 3.8

Data package containing a collection of high-dimensional cytometry benchmark datasets saved in SummarizedExperiment and flowSet Bioconductor object formats, including row and column metadata describing samples, cell populations (clusters), and protein markers.

Author: Lukas M. Weber [aut, cre], Charlotte Soneson [aut]

Maintainer: Lukas M. Weber <lukmweber at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("HDCytoData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HDCytoData")

 

HTML	R Script	HDCytoData data package
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, FlowCytometryData, Homo_sapiens_Data, ImmunoOncologyData
Version	1.2.11
License	MIT + file LICENSE
Depends	ExperimentHub, SummarizedExperiment, flowCore
Imports	utils, methods
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, FlowSOM, Rtsne, ggplot2
SystemRequirements
Enhances
URL	https://github.com/lmweber/HDCytoData
BugReports	https://github.com/lmweber/HDCytoData/issues
Depends On Me
Imports Me
Suggests Me	diffcyt
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	HDCytoData_1.2.11.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/HDCytoData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/HDCytoData
Package Short Url	http://bioconductor.org/packages/HDCytoData/
Package Downloads Report	Download Stats