This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see ExperimentHub.
Bioconductor version: 3.8
This package provides a client for the Bioconductor ExperimentHub web resource. ExperimentHub provides a central location where curated data from experiments, publications or training courses can be accessed. Each resource has associated metadata, tags and date of modification. The client creates and manages a local cache of files retrieved enabling quick and reproducible access.
Author: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R,
enter citation("ExperimentHub")
):
To install this package, start R (version "3.5") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("ExperimentHub")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ExperimentHub")
HTML | R Script | Creating An ExperimentHub Package |
HTML | R Script | ExperimentHub: Access the ExperimentHub Web Service |
Reference Manual | ||
Text | NEWS |
biocViews | DataImport, GUI, Infrastructure, Software, ThirdPartyClient |
Version | 1.8.0 |
In Bioconductor since | BioC 3.4 (R-3.3) (2.5 years) |
License | Artistic-2.0 |
Depends | methods, BiocGenerics(>= 0.15.10), AnnotationHub(>= 2.13.4) |
Imports | utils, S4Vectors, BiocManager, curl |
LinkingTo | |
Suggests | knitr, BiocStyle |
SystemRequirements | |
Enhances | ExperimentHubData |
URL | |
Depends On Me | allenpvc, alpineData, brainImageRdata, CellMapperData, curatedMetagenomicData, FlowSorted.Blood.EPIC, HDCytoData, HumanAffyData, mcsurvdata, MetaGxBreast, MetaGxOvarian, MetaGxPancreas, restfulSEData, SeqSQC, sesameData, tcgaWGBSData.hg19 |
Imports Me | brainImageR, CLLmethylation, CopyNeutralIMA, curatedTCGAData, DuoClustering2018, ExperimentHubData, GSEABenchmarkeR, HarmonizedTCGAData, HMP16SData, restfulSE, TabulaMurisData, TENxBrainData, TENxPBMCData |
Suggests Me | ANF, AnnotationHub, celaref, celarefData, CellMapper, DEqMS, GSE62944, HDF5Array, tissueTreg |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | ExperimentHub_1.8.0.tar.gz |
Windows Binary | ExperimentHub_1.8.0.zip |
Mac OS X 10.11 (El Capitan) | ExperimentHub_1.8.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/ExperimentHub |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ExperimentHub |
Package Short Url | http://bioconductor.org/packages/ExperimentHub/ |
Package Downloads Report | Download Stats |
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