HumanAffyData

DOI: 10.18129/B9.bioc.HumanAffyData    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see HumanAffyData.

GEO accession GSE64985 and ArrayExpress accession E-MTAB-62 as ExpressionSet objects

Bioconductor version: 3.8

Re-analysis of human gene expression data generated on the Affymetrix HG_U133PlusV2 (EH176) and Affymetrix HG_U133A (EH177) platforms. The original data were normalized using robust multiarray averaging (RMA) to obtain an integrated gene expression atlas across diverse biological sample types and conditions. The entire compendia comprisee 9395 arrays for EH176 and 5372 arrays for EH177.

Author: Brad Nelms

Maintainer: Brad Nelms <bnelms.research at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("HumanAffyData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HumanAffyData")

 

PDF	R Script	Intro to the HumanAffyData package
PDF		Reference Manual
Text		NEWS

Details

biocViews	ArrayExpress, ExperimentData, ExpressionData, GEO, Homo_sapiens_Data, MicroarrayData
Version	1.8.0
License	Artistic-2.0
Depends	ExperimentHub, Biobase, R (>= 3.3)
Imports
LinkingTo
Suggests	BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	CellMapper
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	HumanAffyData_1.8.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/HumanAffyData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/HumanAffyData
Package Short Url	http://bioconductor.org/packages/HumanAffyData/
Package Downloads Report	Download Stats