This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see eQTL.
Bioconductor version: 3.8
This workflow focuses on searches for eQTL in cis, so that DNA variants local to the gene assayed for expression are tested for association.
Author: Vincent Carey [aut, cre]
Maintainer: Vincent Carey <stvjc at channing.harvard.edu>
Citation (from within R,
enter citation("eQTL")
):
To install this package, start R (version "3.5") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("eQTL")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("eQTL")
HTML | R Script | Cloud-enabled cis-eQTL searches with Bioconductor GGtools 5.x |
biocViews | GenomicVariantsWorkflow, Workflow |
Version | 1.4.0 |
License | Artistic-2.0 |
Depends | R (>= 3.3.0), GGdata, GGtools, GenomeInfoDb, S4Vectors, SNPlocs.Hsapiens.dbSNP144.GRCh37, bibtex, biglm, data.table, doParallel, foreach, knitcitations, lumi, lumiHumanAll.db, parallel, rmeta, scatterplot3d, snpStats, grid, yri1kgv |
Imports | |
LinkingTo | |
Suggests | knitr, rmarkdown, BiocStyle |
SystemRequirements | |
Enhances | |
URL | https://www.bioconductor.org/help/workflows/eQTL/ |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me |
Follow Installation instructions to use this package in your R session.
Source Package | eQTL_1.4.0.tar.gz |
Windows Binary | |
Mac OS X 10.11 (El Capitan) | |
Source Repository | git clone https://git.bioconductor.org/packages/eQTL |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/eQTL |
Package Short Url | http://bioconductor.org/packages/eQTL/ |
Package Downloads Report | Download Stats |
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