This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see GGtools.
Bioconductor version: 3.8
software and data for analyses in genetics of gene expression and/or DNA methylation
Author: VJ Carey <stvjc at channing.harvard.edu>
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
Citation (from within R,
enter citation("GGtools")
):
To install this package, start R (version "3.5") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("GGtools")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GGtools")
R Script | GGtools: software for eQTL identification | |
Reference Manual | ||
Text | README | |
Text | NEWS |
biocViews | GeneExpression, GeneticVariability, Genetics, SNP, Software |
Version | 5.18.0 |
In Bioconductor since | BioC 1.9 (R-2.4) (12.5 years) |
License | Artistic-2.0 |
Depends | R (>= 2.14), GGBase(>= 3.19.7), data.table, parallel, Homo.sapiens |
Imports | methods, utils, stats, BiocGenerics(>= 0.25.1), snpStats, ff, Rsamtools, AnnotationDbi, Biobase, bit, VariantAnnotation, hexbin, rtracklayer, Gviz, stats4, S4Vectors(>= 0.9.25), IRanges, GenomeInfoDb, GenomicRanges(>= 1.29.6), iterators, Biostrings, ROCR, biglm, ggplot2, reshape2 |
LinkingTo | |
Suggests | GGdata, illuminaHumanv1.db, SNPlocs.Hsapiens.dbSNP144.GRCh37, multtest, aod, rmeta |
SystemRequirements | |
Enhances | MatrixEQTL, foreach, doParallel, gwascat |
URL | |
Depends On Me | ceu1kg, eQTL |
Imports Me | ceuhm3, GeneGeneInteR |
Suggests Me | cgdv17, dsQTL, GGBase, gQTLBase, hmyriB36 |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | GGtools_5.18.0.tar.gz |
Windows Binary | GGtools_5.18.0.zip |
Mac OS X 10.11 (El Capitan) | GGtools_5.18.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/GGtools |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GGtools |
Package Short Url | http://bioconductor.org/packages/GGtools/ |
Package Downloads Report | Download Stats |
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