dsQTL

DOI: 10.18129/B9.bioc.dsQTL    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see dsQTL.

dsQTL, data excerpt from Degner et al. 2012 Nature letter

Bioconductor version: 3.8

dsQTL, excerpt from Degner et al. 2012 Nature letter on DNA variants associated with DnaseI hypersensitivity

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("dsQTL")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("dsQTL")

 

PDF	R Script	dsQTL, data excerpt from Degner et al. 2012 Nature letter
PDF		Reference Manual
Text		NEWS

Details

biocViews	BiocViews, DNASeqData, ExperimentData, Genome, NCI, Project1000genomes, SequencingData
Version	0.20.0
License	Artistic-2.0
Depends	R (>= 2.15.0), utils, Biobase, SummarizedExperiment, GGBase(>= 3.31.1)
Imports
LinkingTo
Suggests	GGtools, rtracklayer
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	yriMulti
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	dsQTL_0.20.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/dsQTL
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/dsQTL
Package Short Url	http://bioconductor.org/packages/dsQTL/
Package Downloads Report	Download Stats