gQTLBase

DOI: 10.18129/B9.bioc.gQTLBase    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see gQTLBase.

gQTLBase: infrastructure for eQTL, mQTL and similar studies

Bioconductor version: 3.8

Infrastructure for eQTL, mQTL and similar studies.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("gQTLBase")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("gQTLBase")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gQTLBase")

 

HTML R Script gQTLBase infrastructure for eQTL archives
PDF   Reference Manual

Details

biocViews Software
Version 1.14.0
In Bioconductor since BioC 3.1 (R-3.2) (4 years)
License Artistic-2.0
Depends
Imports GenomicRanges, methods, BatchJobs, BBmisc, S4Vectors, BiocGenerics, foreach, doParallel, bit, ff, rtracklayer, ffbase, GenomicFiles, SummarizedExperiment
LinkingTo
Suggests geuvStore2, knitr, rmarkdown, BiocStyle, RUnit, GGtools, Homo.sapiens, IRanges, erma, GenomeInfoDb, gwascat, geuvPack
SystemRequirements
Enhances
URL
Depends On Me
Imports Me geuvStore2, gQTLstats, yriMulti
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package gQTLBase_1.14.0.tar.gz
Windows Binary gQTLBase_1.14.0.zip
Mac OS X 10.11 (El Capitan) gQTLBase_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/gQTLBase
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/gQTLBase
Package Short Url http://bioconductor.org/packages/gQTLBase/
Package Downloads Report Download Stats

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