This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see gQTLBase.
Bioconductor version: 3.8
Infrastructure for eQTL, mQTL and similar studies.
Author: VJ Carey <stvjc at channing.harvard.edu>
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
Citation (from within R,
enter citation("gQTLBase")
):
To install this package, start R (version "3.5") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("gQTLBase")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gQTLBase")
HTML | R Script | gQTLBase infrastructure for eQTL archives |
Reference Manual |
biocViews | Software |
Version | 1.14.0 |
In Bioconductor since | BioC 3.1 (R-3.2) (4 years) |
License | Artistic-2.0 |
Depends | |
Imports | GenomicRanges, methods, BatchJobs, BBmisc, S4Vectors, BiocGenerics, foreach, doParallel, bit, ff, rtracklayer, ffbase, GenomicFiles, SummarizedExperiment |
LinkingTo | |
Suggests | geuvStore2, knitr, rmarkdown, BiocStyle, RUnit, GGtools, Homo.sapiens, IRanges, erma, GenomeInfoDb, gwascat, geuvPack |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | geuvStore2, gQTLstats, yriMulti |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | gQTLBase_1.14.0.tar.gz |
Windows Binary | gQTLBase_1.14.0.zip |
Mac OS X 10.11 (El Capitan) | gQTLBase_1.14.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/gQTLBase |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/gQTLBase |
Package Short Url | http://bioconductor.org/packages/gQTLBase/ |
Package Downloads Report | Download Stats |
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