diggit

DOI: 10.18129/B9.bioc.diggit    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see diggit.

Inference of Genetic Variants Driving Cellular Phenotypes

Bioconductor version: 3.8

Inference of Genetic Variants Driving Cellullar Phenotypes by the DIGGIT algorithm

Author: Mariano J Alvarez <reef103 at gmail.com>

Maintainer: Mariano J Alvarez <reef103 at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("diggit")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("diggit")

 

PDF	R Script	Using DIGGIT
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	FunctionalPrediction, GeneExpression, GeneRegulation, NetworkEnrichment, Software, SystemsBiology
Version	1.14.0
In Bioconductor since	BioC 3.1 (R-3.2) (4 years)
License	file LICENSE
Depends	R (>= 3.0.2), Biobase, methods
Imports	ks, viper(>= 1.3.1), parallel
LinkingTo
Suggests	diggitdata
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	diggit_1.14.0.tar.gz
Windows Binary	diggit_1.14.0.zip
Mac OS X 10.11 (El Capitan)	diggit_1.14.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/diggit
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/diggit
Package Short Url	http://bioconductor.org/packages/diggit/
Package Downloads Report	Download Stats