This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see viper.
Bioconductor version: 3.8
Inference of protein activity from gene expression data, including the VIPER and msVIPER algorithms
Author: Mariano J Alvarez <reef103 at gmail.com>
Maintainer: Mariano J Alvarez <reef103 at gmail.com>
Citation (from within R,
enter citation("viper")
):
To install this package, start R (version "3.5") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("viper")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("viper")
R Script | Using VIPER | |
Reference Manual | ||
Text | NEWS | |
Text | LICENSE |
biocViews | FunctionalPrediction, GeneExpression, GeneRegulation, NetworkEnrichment, Software, SystemsBiology |
Version | 1.16.0 |
In Bioconductor since | BioC 2.14 (R-3.1) (5 years) |
License | file LICENSE |
Depends | R (>= 2.14.0), Biobase, methods |
Imports | mixtools, stats, parallel, e1071, KernSmooth |
LinkingTo | |
Suggests | bcellViper |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | aracne.networks, vulcan |
Imports Me | diggit, diggitdata, RTN, RTNsurvival |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | viper_1.16.0.tar.gz |
Windows Binary | viper_1.16.0.zip |
Mac OS X 10.11 (El Capitan) | viper_1.16.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/viper |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/viper |
Package Short Url | http://bioconductor.org/packages/viper/ |
Package Downloads Report | Download Stats |
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