diggitdata

DOI: 10.18129/B9.bioc.diggitdata    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see diggitdata.

Example data for the diggit package

Bioconductor version: 3.8

This package provides expression profile and CNV data for glioblastoma from TCGA, and transcriptional and post-translational regulatory networks assembled with the ARACNe and MINDy algorithms, respectively.

Author: Mariano Javier Alvarez

Maintainer: Mariano Javier Alvarez <reef103 at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("diggitdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("diggitdata")

 

PDF	R Script	Using bcellViper
PDF		Reference Manual
Text		NEWS

Details

biocViews	Cancer, ExperimentData
Version	1.14.0
License	GPL (>=2)
Depends	R (>= 2.14.0), Biobase, methods
Imports	viper
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	diggit
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	diggitdata_1.14.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/diggitdata
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/diggitdata
Package Short Url	http://bioconductor.org/packages/diggitdata/
Package Downloads Report	Download Stats